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Many communities in southwestern Madagascar rely on a mix of foraging, fishing, farming, and herding, with cattle central to local cultures, rituals, and intergenerational wealth transfer. Today these livelihoods are critically threatened by the intensifying effects of climate change and biodiversity loss. Improved understanding of ancient community-environment dynamics can help identify pathways to livelihood sustainability. Multidisciplinary approaches have great potential to improve our understanding of human-environment interactions across spatio-temporal scales. We combine archaeological survey data, oral history interviews, and high-resolution multispectral PlanetScope imagery to explore 400 years of human-environment interaction in the Namonte Basin. Our analysis reveals that settlement and land-use led to significant changes in the region’s ecology, both during periods of occupation and after settlement abandonment. Human activity over this period may have stabilized vegetative systems, whereby seasonal changes in vegetative health were reduced compared to surrounding locations. These ecological legacies may have buffered communities against unpredictable climate challenges.